SP3-BoxCar DIA
Proteomics
Discover your whole proteome with precision and depth. Our SP3-BoxCar DIA platform captures unprecedented breadth and quantification accuracy — typically 2,000–5,000+ proteins per sample in a single run.
Service Overview
This high-resolution, data-independent acquisition method captures unprecedented depth and quantification accuracy across thousands of proteins in a single run. SP3 sample preparation removes interfering salts and contaminants, while BoxCar mass spectrometry delivers superior sensitivity and specificity.
Perfect for discovering biomarkers, tracking protein abundance changes across conditions, or building a complete proteome catalogue — without the complexity of label-based methods.
Best For
Unbiased proteome-wide discovery
Label-free protein quantification
Biomarker identification
Comparing protein profiles across conditions or timepoints
Researchers seeking depth without label-based methods
High-throughput sample series
Deliverables
- → Comprehensive protein identification table (typically 2
- → 000–5
- → 000+ proteins per sample)
- → Quantitative abundance matrix
- → Normalized data ready for statistical analysis
- → Optional: Pathway enrichment and GO term analysis
- → Optional: Custom data visualizations
How It Works
Submit your samples with our intake form. We accept cell lysates
tissue homogenates
and purified proteins.
SP3 magnetic bead-based sample preparation removes interfering contaminants and salts.
Samples are digested and peptides are loaded onto the LC-MS/MS system.
BoxCar data-independent acquisition captures all detectable peptides at high resolution.
Data is searched and proteins are identified and quantified against curated databases.
You receive a formatted data package with all identifications and your requested analyses.
Turnaround
Results typically delivered within 10–14 business days of sample receipt, depending on sample quantity and optional analyses requested.
Platform
SP3 bead-based sample prep combined with BoxCar DIA acquisition on high-resolution mass spectrometry instrumentation.
Proteins Detected
Typically 2,000–5,000+ proteins per sample, depending on sample type, complexity, and preparation quality.
Pricing
$450 CAD per sample. Volume and series discounts available for multi-sample projects.
Sample Requirements
Cell lysates, tissue homogenates, or purified proteins. Contact us to confirm input requirements before shipping.
Ready to submit samples?
Fill out our intake form and our team will follow up within 1 business day.
Submit a Service Request